IL_6C5L_157

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6C5L|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_157 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1279

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6C5L|1|BA|U|2636
6C5L|1|BA|U|2637
6C5L|1|BA|G|2638
6C5L|1|BA|A|2639
6C5L|1|BA|G|2640
*
6C5L|1|BA|C|2774
6C5L|1|BA|A|2775
6C5L|1|BA|A|2776
6C5L|1|BA|G|2777
6C5L|1|BA|A|2778
6C5L|1|BA|U|2779
6C5L|1|BA|G|2780
6C5L|1|BA|A|2781
6C5L|1|BA|G|2782

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L13