IL_6C5L_165

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_165 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.2587

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6C5L|1|BA|U|2847
6C5L|1|BA|G|2848
6C5L|1|BA|U|2849
6C5L|1|BA|A|2850
6C5L|1|BA|A|2851
6C5L|1|BA|G|2852
*
6C5L|1|BA|U|2865
6C5L|1|BA|U|2866
6C5L|1|BA|G|2867
6C5L|1|BA|A|2868
6C5L|1|BA|G|2869

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19