IL_6C5L_189

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_189 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1628

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6C5L|1|CA|G|450
6C5L|1|CA|A|451
6C5L|1|CA|A|452
6C5L|1|CA|A|453
6C5L|1|CA|C|454
6C5L|1|CA|C|455
*
6C5L|1|CA|G|476
6C5L|1|CA|A|477
6C5L|1|CA|C|479
6C5L|1|CA|U|480
6C5L|1|CA|G|481
6C5L|1|CA|A|482
6C5L|1|CA|C|483

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16