IL_6C5L_198

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGU*ACCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_198 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2679

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6C5L|1|CA|G|657
6C5L|1|CA|G|658
6C5L|1|CA|U|659
*
6C5L|1|CA|A|746
6C5L|1|CA|C|747
6C5L|1|CA|C|748
6C5L|1|CA|C|749

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CO

30S ribosomal protein S15