3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAU*AUAG
Length
9 nucleotides
Bulged bases
6C5L|1|DA|A|283
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6C5L_240 not in the Motif Atlas
Homologous match to IL_7RQB_011
Geometric discrepancy: 0.1228
The information below is about IL_7RQB_011
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_04059.1
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6C5L|1|DA|C|280
6C5L|1|DA|G|281
6C5L|1|DA|A|282
6C5L|1|DA|A|283
6C5L|1|DA|U|284
*
6C5L|1|DA|A|357
6C5L|1|DA|U|358
6C5L|1|DA|A|359
6C5L|1|DA|G|360

Current chains

Chain DA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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