IL_6C5L_240
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAU*AUAG
- Length
- 9 nucleotides
- Bulged bases
- 6C5L|1|DA|A|283
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_240 not in the Motif Atlas
- Homologous match to IL_7RQB_011
- Geometric discrepancy: 0.1228
- The information below is about IL_7RQB_011
- Detailed Annotation
- tSH-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_04059.1
- Basepair signature
- cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6C5L|1|DA|C|280
6C5L|1|DA|G|281
6C5L|1|DA|A|282
6C5L|1|DA|A|283
6C5L|1|DA|U|284
*
6C5L|1|DA|A|357
6C5L|1|DA|U|358
6C5L|1|DA|A|359
6C5L|1|DA|G|360
Current chains
- Chain DA
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: