3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6C5L_245 not in the Motif Atlas
Homologous match to IL_4WF9_019
Geometric discrepancy: 0.1564
The information below is about IL_4WF9_019
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_66798.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6C5L|1|DA|U|606
6C5L|1|DA|U|607
6C5L|1|DA|A|608
6C5L|1|DA|A|609
6C5L|1|DA|G|610
*
6C5L|1|DA|C|618
6C5L|1|DA|G|619
6C5L|1|DA|G|620
6C5L|1|DA|A|621
6C5L|1|DA|G|622

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DF
50S ribosomal protein L4
Chain DP
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2655 s