IL_6C5L_247

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6C5L|1|DA|G|801, 6C5L|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_247 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.0936

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6C5L|1|DA|G|674
6C5L|1|DA|A|675
6C5L|1|DA|A|676
6C5L|1|DA|A|677
6C5L|1|DA|C|678
*
6C5L|1|DA|G|799
6C5L|1|DA|A|800
6C5L|1|DA|G|801
6C5L|1|DA|A|802
6C5L|1|DA|U|803
6C5L|1|DA|A|804
6C5L|1|DA|G|805
6C5L|1|DA|C|806

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15