IL_6C5L_256
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_256 not in the Motif Atlas
- Homologous match to IL_7RQB_027
- Geometric discrepancy: 0.1486
- The information below is about IL_7RQB_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.1
- Basepair signature
- cWW-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6C5L|1|DA|U|858
6C5L|1|DA|G|859
6C5L|1|DA|U|860
6C5L|1|DA|A|861
6C5L|1|DA|G|862
*
6C5L|1|DA|C|915
6C5L|1|DA|G|916
6C5L|1|DA|A|917
6C5L|1|DA|A|918
6C5L|1|DA|G|919
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L27
- Chain D3
- 50S ribosomal protein L30
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S ribosomal protein L16
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