IL_6C5L_274

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6C5L|1|DA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_274 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1289

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6C5L|1|DA|C|1208
6C5L|1|DA|G|1209
6C5L|1|DA|A|1210
6C5L|1|DA|U|1211
6C5L|1|DA|G|1212
6C5L|1|DA|A|1213
6C5L|1|DA|A|1214
6C5L|1|DA|G|1215
*
6C5L|1|DA|U|1234
6C5L|1|DA|G|1235
6C5L|1|DA|G|1236
6C5L|1|DA|A|1237
6C5L|1|DA|G|1238

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L20