IL_6C5L_296

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6C5L|1|DA|G|1801, 6C5L|1|DA|G|1816, 6C5L|1|DA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_296 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0976

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6C5L|1|DA|U|1798
6C5L|1|DA|G|1799
6C5L|1|DA|C|1800
6C5L|1|DA|G|1801
6C5L|1|DA|A|1802
6C5L|1|DA|A|1803
6C5L|1|DA|C|1804
*
6C5L|1|DA|G|1813
6C5L|1|DA|G|1814
6C5L|1|DA|A|1815
6C5L|1|DA|G|1816
6C5L|1|DA|G|1817
6C5L|1|DA|U|1818
6C5L|1|DA|A|1819
6C5L|1|DA|U|1820
6C5L|1|DA|A|1821

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2