IL_6C5L_300

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_300 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1708

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6C5L|1|DA|U|1851
6C5L|1|DA|C|1852
6C5L|1|DA|A|1853
6C5L|1|DA|A|1854
6C5L|1|DA|G|1855
*
6C5L|1|DA|C|1887
6C5L|1|DA|G|1888
6C5L|1|DA|A|1889
6C5L|1|DA|A|1890
6C5L|1|DA|G|1891

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DD

50S ribosomal protein L2