IL_6C5L_301

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_301 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1155

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6C5L|1|DA|G|1856
6C5L|1|DA|G|1857
6C5L|1|DA|G|1858
6C5L|1|DA|A|1859
6C5L|1|DA|G|1860
*
6C5L|1|DA|C|1882
6C5L|1|DA|G|1883
6C5L|1|DA|A|1884
6C5L|1|DA|A|1885
6C5L|1|DA|C|1886

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain D1

50S ribosomal protein L28

Chain DC

50S ribosomal protein L1