IL_6C5L_311

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

6C5L|1|DA|A|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_311 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.2766

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6C5L|1|DA|G|2124
6C5L|1|DA|G|2125
6C5L|1|DA|A|2126
6C5L|1|DA|G|2127
*
6C5L|1|DA|C|2161
6C5L|1|DA|G|2162
6C5L|1|DA|C|2163
6C5L|1|DA|C|2164
6C5L|1|DA|G|2165
6C5L|1|DA|G|2166
6C5L|1|DA|U|2167
6C5L|1|DA|G|2168
6C5L|1|DA|A|2169
6C5L|1|DA|A|2170
6C5L|1|DA|A|2171
6C5L|1|DA|U|2172
6C5L|1|DA|A|2173
6C5L|1|DA|C|2174

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DC

50S ribosomal protein L1