IL_6C5L_320
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_320 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.173
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6C5L|1|DA|C|2466
6C5L|1|DA|C|2467
6C5L|1|DA|G|2468
6C5L|1|DA|A|2469
6C5L|1|DA|G|2470
*
6C5L|1|DA|C|2480
6C5L|1|DA|G|2481
6C5L|1|DA|G|2482
6C5L|1|DA|C|2483
6C5L|1|DA|G|2484
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain CY
- Peptide chain release factor 2
- Chain D9
- 50S ribosomal protein L36
- Chain DQ
- 50S ribosomal protein L16
- Chain DZ
- 50S ribosomal protein L25
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