IL_6C5L_329

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

6C5L|1|DA|U|2689, 6C5L|1|DA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_329 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.1135

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6C5L|1|DA|U|2687
6C5L|1|DA|U|2688
6C5L|1|DA|U|2689
6C5L|1|DA|C|2690
6C5L|1|DA|C|2691
*
6C5L|1|DA|G|2718
6C5L|1|DA|G|2719
6C5L|1|DA|U|2720
6C5L|1|DA|A|2721
6C5L|1|DA|G|2722

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DR

50S ribosomal protein L17

Chain DT

50S ribosomal protein L19