IL_6C5L_357

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6C5L|1|BA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_357 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.2217

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6C5L|1|BA|C|844
6C5L|1|BA|G|845
6C5L|1|BA|C|846
6C5L|1|BA|U|847
6C5L|1|BA|G|848
6C5L|1|BA|A|849
6C5L|1|BA|C|850
*
6C5L|1|BA|G|927
6C5L|1|BA|G|928
6C5L|1|BA|U|930
6C5L|1|BA|G|931
6C5L|1|BA|G|932
6C5L|1|BA|A|933
6C5L|1|BA|G|934

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L30