IL_6C5L_359

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGC*GCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_359 not in the Motif Atlas

Geometric match to IL_8C3A_419

Geometric discrepancy: 0.2565

The information below is about IL_8C3A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47767.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6C5L|1|BA|G|1448
6C5L|1|BA|A|1449
6C5L|1|BA|G|1450
6C5L|1|BA|C|1450|||A
*
6C5L|1|BA|G|1461
6C5L|1|BA|C|1462
6C5L|1|BA|C|1463

Current chains

Chain BA

23S rRNA

Nearby chains