IL_6C5L_361

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_361 not in the Motif Atlas

Homologous match to IL_7A0S_109

Geometric discrepancy: 0.1026

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6C5L|1|BA|G|1666
6C5L|1|BA|G|1667
6C5L|1|BA|A|1668
6C5L|1|BA|A|1669
6C5L|1|BA|C|1670
6C5L|1|BA|U|1671
6C5L|1|BA|C|1672
6C5L|1|BA|U|1673
6C5L|1|BA|G|1674
*
6C5L|1|BA|C|1990
6C5L|1|BA|U|1991
6C5L|1|BA|G|1992
6C5L|1|BA|U|1993
6C5L|1|BA|C|1994

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14