IL_6C5L_365

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGC*GCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_365 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.1811

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

6C5L|1|CA|G|593
6C5L|1|CA|G|594
6C5L|1|CA|G|595
6C5L|1|CA|C|596
*
6C5L|1|CA|G|644
6C5L|1|CA|C|645
6C5L|1|CA|U|646

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CQ

30S ribosomal protein S17