IL_6C5L_379
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCC*GGC
- Length
- 7 nucleotides
- Bulged bases
- 6C5L|1|DA|C|2402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_379 not in the Motif Atlas
- Geometric match to IL_5ML7_010
- Geometric discrepancy: 0.3263
- The information below is about IL_5ML7_010
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6C5L|1|DA|G|2400
6C5L|1|DA|U|2401
6C5L|1|DA|C|2402
6C5L|1|DA|C|2403
*
6C5L|1|DA|G|2414
6C5L|1|DA|G|2415
6C5L|1|DA|C|2416
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L28
- Chain D6
- 50S ribosomal protein L33
- Chain D8
- 50S ribosomal protein L35
- Chain DP
- 50S ribosomal protein L15
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