IL_6CAE_046

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6CAE|1|1A|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAE_046 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0308

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6CAE|1|1A|C|1253
6CAE|1|1A|G|1254
6CAE|1|1A|A|1255
6CAE|1|1A|U|1256
6CAE|1|1A|G|1257
6CAE|1|1A|A|1258
6CAE|1|1A|A|1259
6CAE|1|1A|G|1260
*
6CAE|1|1A|U|1280
6CAE|1|1A|G|1281
6CAE|1|1A|G|1282
6CAE|1|1A|A|1283
6CAE|1|1A|G|1284

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20