IL_6CAE_073
3D structure
- PDB id
- 6CAE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UCAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CAE_073 not in the Motif Atlas
- Homologous match to IL_7RQB_074
- Geometric discrepancy: 0.0748
- The information below is about IL_7RQB_074
- Detailed Annotation
- UAA/GAN with extra stack
- Broad Annotation
- No text annotation
- Motif group
- IL_90318.1
- Basepair signature
- cWW-tSH-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6CAE|1|1A|U|1882
6CAE|1|1A|C|1883
6CAE|1|1A|A|1884
6CAE|1|1A|A|1885
6CAE|1|1A|G|1886
*
6CAE|1|1A|C|1909
6CAE|1|1A|G|1910
6CAE|1|1A|A|1911
6CAE|1|1A|A|1912
6CAE|1|1A|G|1913
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1y
- Transfer RNA; tRNA
Coloring options: