IL_6CAE_188

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

6CAE|1|2A|U|504, 6CAE|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAE_188 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0434

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

6CAE|1|2A|G|481
6CAE|1|2A|A|482
6CAE|1|2A|A|483
6CAE|1|2A|C|484
*
6CAE|1|2A|G|496
6CAE|1|2A|A|497
6CAE|1|2A|G|498
6CAE|1|2A|U|499
6CAE|1|2A|G|500
6CAE|1|2A|A|501
6CAE|1|2A|A|502
6CAE|1|2A|A|503
6CAE|1|2A|U|504
6CAE|1|2A|A|505
6CAE|1|2A|G|506
6CAE|1|2A|A|507
6CAE|1|2A|G|508
6CAE|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24