IL_6CAO_030

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAAUU*AGGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAO_030 not in the Motif Atlas

Geometric match to IL_4LFB_030

Geometric discrepancy: 0.0641

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6CAO|1|A|G|673
6CAO|1|A|G|674
6CAO|1|A|A|675
6CAO|1|A|A|676
6CAO|1|A|U|677
6CAO|1|A|U|678
*
6CAO|1|A|A|712
6CAO|1|A|G|713
6CAO|1|A|G|714
6CAO|1|A|A|715
6CAO|1|A|A|716
6CAO|1|A|C|717

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain K

30S ribosomal protein S11

Chain R

30S ribosomal protein S18