3D structure

PDB id
6CAO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosomal decoding complex at ambient temperature
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
6CAO|1|A|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CAO_042 not in the Motif Atlas
Homologous match to IL_4LFB_044
Geometric discrepancy: 0.0625
The information below is about IL_4LFB_044
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_76319.5
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

6CAO|1|A|U|1052
6CAO|1|A|G|1053
6CAO|1|A|C|1054
6CAO|1|A|A|1055
6CAO|1|A|U|1056
*
6CAO|1|A|A|1204
6CAO|1|A|U|1205
6CAO|1|A|G|1206

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z
Chain W
RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')
Chain Y
RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')

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