3D structure

PDB id
6CAO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosomal decoding complex at ambient temperature
Experimental method
X-RAY DIFFRACTION
Resolution
3.45 Å

Loop

Sequence
GAUG*CUAAUC
Length
10 nucleotides
Bulged bases
6CAO|1|A|U|1257, 6CAO|1|A|U|1278, 6CAO|1|A|A|1280, 6CAO|1|A|U|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CAO_050 not in the Motif Atlas
Homologous match to IL_4LFB_052
Geometric discrepancy: 0.1328
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

6CAO|1|A|G|1255
6CAO|1|A|A|1256
6CAO|1|A|U|1257
6CAO|1|A|G|1258
*
6CAO|1|A|C|1277
6CAO|1|A|U|1278
6CAO|1|A|A|1279
6CAO|1|A|A|1280
6CAO|1|A|U|1281
6CAO|1|A|C|1282

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z

Coloring options:


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