IL_6CAO_054

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

6CAO|1|A|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAO_054 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1905

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6CAO|1|A|C|1399
6CAO|1|A|5MC|1400
6CAO|1|A|G|1401
*
6CAO|1|A|C|1501
6CAO|1|A|A|1502
6CAO|1|A|A|1503
6CAO|1|A|G|1504

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain Y

RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')