IL_6CAO_061

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

6CAO|1|A|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAO_061 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1553

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

6CAO|1|A|C|1440
6CAO|1|A|G|1441
6CAO|1|A|G|1442
6CAO|1|A|G|1443
6CAO|1|A|A|1446
6CAO|1|A|G|1447
*
6CAO|1|A|C|1459
6CAO|1|A|A|1460
6CAO|1|A|G|1461

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20