IL_6CAP_042

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAP_042 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.157

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6CAP|1|A|G|1050
6CAP|1|A|C|1051
6CAP|1|A|U|1052
*
6CAP|1|A|G|1206
6CAP|1|A|2MG|1207
6CAP|1|A|C|1208

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain N

30S ribosomal protein S14 type Z

Chain W

RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')