IL_6CAP_062

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6CAP|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAP_062 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1145

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6CAP|1|A|G|662
6CAP|1|A|A|663
6CAP|1|A|G|664
6CAP|1|A|A|665
6CAP|1|A|G|666
*
6CAP|1|A|U|740
6CAP|1|A|G|741
6CAP|1|A|G|742
6CAP|1|A|U|743

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18