IL_6CAP_065

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGGG*CCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAP_065 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.3491

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6CAP|1|A|A|1001
6CAP|1|A|G|1002
6CAP|1|A|G|1003
6CAP|1|A|G|1003|||A
*
6CAP|1|A|C|1038
6CAP|1|A|C|1039
6CAP|1|A|U|1040

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains