IL_6CAQ_019

3D structure

PDB id

6CAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAQ_019 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1568

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6CAQ|1|A|G|450
6CAQ|1|A|A|451
6CAQ|1|A|A|452
6CAQ|1|A|A|453
6CAQ|1|A|C|454
6CAQ|1|A|C|455
*
6CAQ|1|A|G|477
6CAQ|1|A|A|478
6CAQ|1|A|C|479
6CAQ|1|A|U|480
6CAQ|1|A|G|481
6CAQ|1|A|A|482
6CAQ|1|A|C|483

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16