IL_6CAR_015

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAR_015 not in the Motif Atlas

Homologous match to IL_4LFB_015

Geometric discrepancy: 0.0879

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

6CAR|1|A|G|371
6CAR|1|A|C|372
6CAR|1|A|A|373
6CAR|1|A|A|374
6CAR|1|A|U|375
*
6CAR|1|A|A|389
6CAR|1|A|C|390

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16