IL_6CAR_020

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CAR_020 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0686

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6CAR|1|A|C|504
6CAR|1|A|G|505
6CAR|1|A|G|506
6CAR|1|A|C|507
6CAR|1|A|C|508
6CAR|1|A|A|509
6CAR|1|A|A|510
6CAR|1|A|C|511
*
6CAR|1|A|G|540
6CAR|1|A|G|541

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain E

30S ribosomal protein S5

Chain L

30S ribosomal protein S12