IL_6CB1_007

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CB1_007 not in the Motif Atlas

Homologous match to IL_5TBW_009

Geometric discrepancy: 0.3204

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6CB1|1|1|A|164
6CB1|1|1|A|165
6CB1|1|1|C|166
*
6CB1|1|1|G|256
6CB1|1|1|U|257

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains

Chain 7

Nucleolar protein 16

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A