IL_6CB1_011

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

6CB1|1|1|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CB1_011 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.1061

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6CB1|1|1|G|337
6CB1|1|1|A|338
6CB1|1|1|C|339
*
6CB1|1|2|G|25
6CB1|1|2|U|26

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Chain 2

5.8S rRNA

Nearby chains

Chain 7

Nucleolar protein 16

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A