IL_6CB1_013

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGAAAU*ACGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CB1_013 not in the Motif Atlas

Homologous match to IL_5TBW_015

Geometric discrepancy: 0.0885

The information below is about IL_5TBW_015

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6CB1|1|1|G|404
6CB1|1|1|U|405
6CB1|1|1|G|406
6CB1|1|1|A|407
6CB1|1|1|A|408
6CB1|1|1|A|409
6CB1|1|1|U|410
*
6CB1|1|2|A|13
6CB1|1|2|C|14
6CB1|1|2|G|15
6CB1|1|2|G|16
6CB1|1|2|A|17
6CB1|1|2|U|18
6CB1|1|2|C|19

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Chain 2

5.8S rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain e

60S ribosomal protein L32