IL_6CB1_016
3D structure
- PDB id
- 6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCC*GAAUCUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CB1_016 not in the Motif Atlas
- Geometric match to IL_4WF9_050
- Geometric discrepancy: 0.3117
- The information below is about IL_4WF9_050
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- No text annotation
- Motif group
- IL_06671.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
6CB1|1|1|G|452
6CB1|1|1|C|453
6CB1|1|1|C|454
*
6CB1|1|1|G|476
6CB1|1|1|A|477
6CB1|1|1|A|478
6CB1|1|1|U|479
6CB1|1|1|C|480
6CB1|1|1|U|481
6CB1|1|1|C|482
Current chains
- Chain 1
- 35S pre-ribosomal RNA miscRNA
Nearby chains
- Chain A
- Ribosome biogenesis protein NSA1
- Chain D
- Protein MAK16
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