IL_6CB1_025

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CB1_025 not in the Motif Atlas

Homologous match to IL_5TBW_026

Geometric discrepancy: 0.2058

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6CB1|1|1|C|758
6CB1|1|1|U|759
6CB1|1|1|G|760
6CB1|1|1|A|761
6CB1|1|1|U|762
6CB1|1|1|G|763
*
6CB1|1|1|C|768
6CB1|1|1|G|769
6CB1|1|1|G|770
6CB1|1|1|A|771
6CB1|1|1|U|772
6CB1|1|1|G|773

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains

Chain b

Ribosome biogenesis protein BRX1