3D structure

PDB id
6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast nucleolar pre-60S ribosomal subunit (state 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
UG*UGAA
Length
6 nucleotides
Bulged bases
6CB1|1|6|G|52, 6CB1|1|6|A|53
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CB1_052 not in the Motif Atlas
Geometric match to IL_5WLH_001
Geometric discrepancy: 0.3445
The information below is about IL_5WLH_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.4
Basepair signature
cWW-cWW
Number of instances in this motif group
30

Unit IDs

6CB1|1|6|U|26
6CB1|1|6|G|27
*
6CB1|1|6|U|51
6CB1|1|6|G|52
6CB1|1|6|A|53
6CB1|1|6|A|54

Current chains

Chain 6
ITS2

Nearby chains

Chain G
60S ribosomal protein L8-A
Chain K
Proteasome-interacting protein CIC1
Chain o
Ribosome biogenesis protein 15
Chain p
ATP-dependent RNA helicase HAS1

Coloring options:


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