IL_6CB1_052
3D structure
- PDB id
- 6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UG*UGAA
- Length
- 6 nucleotides
- Bulged bases
- 6CB1|1|6|G|52, 6CB1|1|6|A|53
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CB1_052 not in the Motif Atlas
- Geometric match to IL_5WLH_001
- Geometric discrepancy: 0.3445
- The information below is about IL_5WLH_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.5
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 31
Unit IDs
6CB1|1|6|U|26
6CB1|1|6|G|27
*
6CB1|1|6|U|51
6CB1|1|6|G|52
6CB1|1|6|A|53
6CB1|1|6|A|54
Current chains
- Chain 6
- ITS2
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain K
- Proteasome-interacting protein CIC1
- Chain o
- Ribosome biogenesis protein 15
- Chain p
- ATP-dependent RNA helicase HAS1
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