IL_6CB1_056

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6CB1|1|1|U|1820, 6CB1|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CB1_056 not in the Motif Atlas

Homologous match to IL_8CRE_070

Geometric discrepancy: 0.1836

The information below is about IL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6CB1|1|1|G|1623
6CB1|1|1|G|1624
*
6CB1|1|1|U|1819
6CB1|1|1|U|1820
6CB1|1|1|U|1821
6CB1|1|1|C|1822

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain s

Ribosome biogenesis protein ERB1