IL_6CFJ_011

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

6CFJ|1|1A|A|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_011 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1111

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6CFJ|1|1A|C|304
6CFJ|1|1A|G|305
6CFJ|1|1A|A|306
6CFJ|1|1A|A|307
6CFJ|1|1A|U|308
*
6CFJ|1|1A|A|381
6CFJ|1|1A|U|382
6CFJ|1|1A|A|383
6CFJ|1|1A|G|384

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains