IL_6CFJ_082
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCGUAGGAUAG*CC
- Length
- 13 nucleotides
- Bulged bases
- 6CFJ|1|1A|G|2138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFJ_082 not in the Motif Atlas
- Homologous match to IL_3U4M_002
- Geometric discrepancy: 0.278
- The information below is about IL_3U4M_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_32056.1
- Basepair signature
- cWW-L-cWW-L-L-tWH-R-L-R-L
- Number of instances in this motif group
- 3
Unit IDs
6CFJ|1|1A|G|2132
6CFJ|1|1A|C|2133
6CFJ|1|1A|G|2134
6CFJ|1|1A|U|2135
6CFJ|1|1A|A|2136
6CFJ|1|1A|G|2137
6CFJ|1|1A|G|2138
6CFJ|1|1A|A|2139
6CFJ|1|1A|U|2140
6CFJ|1|1A|A|2141
6CFJ|1|1A|G|2142
*
6CFJ|1|1A|C|2200
6CFJ|1|1A|C|2201
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1y
- Transfer RNA; tRNA
Coloring options: