IL_6CFJ_083

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_083 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3598

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6CFJ|1|1A|G|2146
6CFJ|1|1A|G|2147
6CFJ|1|1A|A|2148
6CFJ|1|1A|G|2149
*
6CFJ|1|1A|C|2183
6CFJ|1|1A|G|2184
6CFJ|1|1A|C|2185
6CFJ|1|1A|C|2186
6CFJ|1|1A|G|2187
6CFJ|1|1A|G|2188
6CFJ|1|1A|U|2189
6CFJ|1|1A|G|2190
6CFJ|1|1A|A|2191
6CFJ|1|1A|A|2192
6CFJ|1|1A|A|2193
6CFJ|1|1A|U|2194
6CFJ|1|1A|A|2195
6CFJ|1|1A|C|2196

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA