IL_6CFJ_099
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6CFJ|1|1A|G|2793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFJ_099 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.0503
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6CFJ|1|1A|U|2648
6CFJ|1|1A|U|2649
6CFJ|1|1A|G|2650
6CFJ|1|1A|A|2651
6CFJ|1|1A|G|2652
*
6CFJ|1|1A|C|2787
6CFJ|1|1A|A|2788
6CFJ|1|1A|A|2789
6CFJ|1|1A|G|2790
6CFJ|1|1A|A|2791
6CFJ|1|1A|U|2792
6CFJ|1|1A|G|2793
6CFJ|1|1A|A|2794
6CFJ|1|1A|G|2795
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
Coloring options: