IL_6CFJ_107
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UGUAAG*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFJ_107 not in the Motif Atlas
- Homologous match to IL_7RQB_110
- Geometric discrepancy: 0.0604
- The information below is about IL_7RQB_110
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.5
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6CFJ|1|1A|U|2857
6CFJ|1|1A|G|2858
6CFJ|1|1A|U|2859
6CFJ|1|1A|A|2860
6CFJ|1|1A|A|2861
6CFJ|1|1A|G|2862
*
6CFJ|1|1A|U|2875
6CFJ|1|1A|U|2876
6CFJ|1|1A|G|2877
6CFJ|1|1A|A|2878
6CFJ|1|1A|G|2879
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1R
- 50S ribosomal protein L17
- Chain 1T
- 50S ribosomal protein L19
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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