3D structure

PDB id
6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UGUAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFJ_198 not in the Motif Atlas
Homologous match to IL_7RQB_027
Geometric discrepancy: 0.123
The information below is about IL_7RQB_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_38862.1
Basepair signature
cWW-L-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6CFJ|1|2A|U|858
6CFJ|1|2A|G|859
6CFJ|1|2A|U|860
6CFJ|1|2A|A|861
6CFJ|1|2A|G|862
*
6CFJ|1|2A|C|915
6CFJ|1|2A|G|916
6CFJ|1|2A|A|917
6CFJ|1|2A|A|918
6CFJ|1|2A|G|919

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 2B
5S ribosomal RNA; 5S rRNA
Chain 2Q
50S ribosomal protein L16

Coloring options:


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