IL_6CFJ_209
3D structure
- PDB id
- 6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 6CFJ|1|2A|U|1026, 6CFJ|1|2A|A|1127, 6CFJ|1|2A|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6CFJ_209 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0719
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6CFJ|1|2A|G|1024
6CFJ|1|2A|G|1025
6CFJ|1|2A|U|1026
6CFJ|1|2A|A|1027
6CFJ|1|2A|A|1028
6CFJ|1|2A|A|1029
6CFJ|1|2A|G|1030
*
6CFJ|1|2A|C|1124
6CFJ|1|2A|G|1125
6CFJ|1|2A|A|1126
6CFJ|1|2A|A|1127
6CFJ|1|2A|A|1128
6CFJ|1|2A|A|1129
6CFJ|1|2A|U|1130
6CFJ|1|2A|G|1131
6CFJ|1|2A|A|1132
6CFJ|1|2A|U|1133
6CFJ|1|2A|C|1135
6CFJ|1|2A|G|1136
6CFJ|1|2A|G|1137
6CFJ|1|2A|G|1138
6CFJ|1|2A|G|1139
6CFJ|1|2A|C|1140
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L36
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2E
- 50S ribosomal protein L3
- Chain 2N
- 50S ribosomal protein L13
- Chain 2Q
- 50S ribosomal protein L16
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