3D structure

PDB id
6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
6CFJ|1|2A|U|1026, 6CFJ|1|2A|A|1127, 6CFJ|1|2A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6CFJ_209 not in the Motif Atlas
Geometric match to IL_7RQB_040
Geometric discrepancy: 0.0719
The information below is about IL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6CFJ|1|2A|G|1024
6CFJ|1|2A|G|1025
6CFJ|1|2A|U|1026
6CFJ|1|2A|A|1027
6CFJ|1|2A|A|1028
6CFJ|1|2A|A|1029
6CFJ|1|2A|G|1030
*
6CFJ|1|2A|C|1124
6CFJ|1|2A|G|1125
6CFJ|1|2A|A|1126
6CFJ|1|2A|A|1127
6CFJ|1|2A|A|1128
6CFJ|1|2A|A|1129
6CFJ|1|2A|U|1130
6CFJ|1|2A|G|1131
6CFJ|1|2A|A|1132
6CFJ|1|2A|U|1133
6CFJ|1|2A|C|1135
6CFJ|1|2A|G|1136
6CFJ|1|2A|G|1137
6CFJ|1|2A|G|1138
6CFJ|1|2A|G|1139
6CFJ|1|2A|C|1140

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 29
50S ribosomal protein L36
Chain 2B
5S ribosomal RNA; 5S rRNA
Chain 2E
50S ribosomal protein L3
Chain 2N
50S ribosomal protein L13
Chain 2Q
50S ribosomal protein L16

Coloring options:


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