IL_6CFJ_229

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6CFJ|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_229 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0979

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6CFJ|1|2A|G|1526
6CFJ|1|2A|G|1527
6CFJ|1|2A|A|1528
6CFJ|1|2A|A|1528|||A
6CFJ|1|2A|G|1529
*
6CFJ|1|2A|U|1540
6CFJ|1|2A|G|1541
6CFJ|1|2A|A|1542
6CFJ|1|2A|C|1543
6CFJ|1|2A|A|1544
6CFJ|1|2A|A|1545
6CFJ|1|2A|C|1546

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains