IL_6CFJ_290

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6CFJ|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6CFJ_290 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0994

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6CFJ|1|2a|G|148
6CFJ|1|2a|A|149
6CFJ|1|2a|C|150
6CFJ|1|2a|A|151
6CFJ|1|2a|A|152
6CFJ|1|2a|C|153
*
6CFJ|1|2a|G|168
6CFJ|1|2a|C|169
6CFJ|1|2a|U|170
6CFJ|1|2a|A|171
6CFJ|1|2a|A|172
6CFJ|1|2a|U|173
6CFJ|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20